PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005205-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 92aa    MW: 10765.3 Da    PI: 9.1219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005205-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.8e-131792182
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
                   ffk++   + l +++l++p +f+ ++++k  +    +led+sg +W  kl  r++s++++l++GW +F  ++ + +++f++F
  NNU_005205-RA 17 FFKIM--LSGLPTQQLWIPPNFTMHISKKAVG--RAILEDRSGYRWFTKL--RQTSSGTYLGEGWHDFSVDHFILDNEFLLF 92
                   88989..999999**********777766555..69**************..***************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-14992IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-151092IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.4061592IPR003340B3 DNA binding domain
CDDcd100178.42E-111592No hitNo description
PfamPF023627.9E-111792IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MVKTSENSSC QDKKPYFFKI MLSGLPTQQL WIPPNFTMHI SKKAVGRAIL EDRSGYRWFT  60
KLRQTSSGTY LGEGWHDFSV DHFILDNEFL LF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266787.15e-51PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X3
RefseqXP_010266788.14e-51PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-10B3 family protein